Finding the unloaded geometry#
from fenics_plotly import plot
import pulse
geometry = pulse.HeartGeometry.from_file(pulse.mesh_paths["simple_ellipsoid"])
# geometry = pulse.geometries.prolate_ellipsoid_geometry(mesh_size_factor=3.0)
material = pulse.NeoHookean()
# material = pulse.Guccione()
2024-03-09 13:49:13,870 [621] INFO pulse.geometry_utils:
Load mesh from h5
# Parameter for the cardiac boundary conditions
bcs_parameters = pulse.MechanicsProblem.default_bcs_parameters()
bcs_parameters["base_spring"] = 1.0
bcs_parameters["base_bc"] = "fix_x"
# Create the problem
problem = pulse.MechanicsProblem(geometry, material, bcs_parameters=bcs_parameters)
# Suppose geometry is loaded with a pressure of 1 kPa
# and create the unloader
unloader = pulse.FixedPointUnloader(problem=problem, pressure=3.0)
2024-03-09 13:49:14,008 [621] INFO pulse.unloader:
-------------------------- Unloading options ---------------------------
Target pressure: 3.0
maxiter = 10
tolerance = 0.0001
regenerate_fibers (serial only)= False
------------------------------------------------------------------------
# Unload the geometry
unloader.unload()
2024-03-09 13:49:14,014 [621] INFO pulse.unloader: ------------------------------------------------------------------------
2024-03-09 13:49:14,015 [621] INFO pulse.unloader: ----------------------------Start unloading-----------------------------
2024-03-09 13:49:14,015 [621] INFO pulse.unloader: ------------------------------------------------------------------------
2024-03-09 13:49:14,048 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:49:14,049 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:49:14,050 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:49:14,050 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:49:14,234 [621] DEBUG UFL_LEGACY: Blocks of each mode:
1 full
2024-03-09 13:49:15,101 [621] INFO pulse.unloader:
LV Volume of original geometry = 0.749 ml
2024-03-09 13:49:15,119 [621] INFO pulse.unloader:
Do an intial solve
2024-03-09 13:49:15,212 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:49:15,213 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:49:15,214 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:49:15,214 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:49:15,215 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:49:15,760 [621] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2024-03-09 13:49:15,836 [621] DEBUG UFL_LEGACY: Blocks of each mode:
2024-03-09 13:49:16,048 [621] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2024-03-09 13:49:55,830 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:49:55,831 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:49:55,832 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:49:55,832 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:49:55,833 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:49:56,023 [621] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2024-03-09 13:49:56,098 [621] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-03-09 13:49:56,289 [621] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-03-09 13:49:59,756 [621] INFO pulse.unloader:
Iteration: 0
2024-03-09 13:50:03,410 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-03-09 13:50:03,452 [621] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-03-09 13:50:07,733 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:07,738 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-03-09 13:50:07,781 [621] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-03-09 13:50:08,179 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:08,224 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:08,225 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:08,267 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:08,269 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:08,307 [621] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.568 ml
2024-03-09 13:50:08,464 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:50:08,464 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:50:08,465 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:50:08,465 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:50:08,466 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:50:08,764 [621] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2024-03-09 13:50:08,838 [621] DEBUG UFL_LEGACY: Blocks of each mode:
2024-03-09 13:50:09,094 [621] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2024-03-09 13:50:48,054 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:50:48,055 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:50:48,055 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:50:48,056 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:50:48,056 [621] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-03-09 13:50:48,196 [621] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2024-03-09 13:50:48,272 [621] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-03-09 13:50:48,461 [621] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-03-09 13:50:51,949 [621] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.568 ml
2024-03-09 13:50:52,122 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:52,123 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:52,166 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:52,168 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:52,210 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:52,211 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:52,249 [621] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.717 ml
2024-03-09 13:50:52,261 [621] INFO pulse.unloader:
Residual: 0.011328623428538017
2024-03-09 13:50:52,261 [621] INFO pulse.unloader:
Iteration: 1
2024-03-09 13:50:52,435 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:52,436 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:52,478 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:52,480 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:52,521 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:52,523 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:52,560 [621] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.596 ml
2024-03-09 13:50:55,611 [621] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.596 ml
2024-03-09 13:50:55,784 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:55,785 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:55,827 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:55,828 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:55,869 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:55,871 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:55,908 [621] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.754 ml
2024-03-09 13:50:55,920 [621] INFO pulse.unloader:
Residual: 0.001698010214540199
2024-03-09 13:50:55,920 [621] INFO pulse.unloader:
Iteration: 2
2024-03-09 13:50:56,094 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:56,096 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:56,138 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:56,139 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:56,182 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:56,184 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:56,222 [621] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.592 ml
2024-03-09 13:50:59,335 [621] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.592 ml
2024-03-09 13:50:59,508 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:59,510 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:59,552 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:59,553 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:59,595 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:59,597 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:59,636 [621] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.749 ml
2024-03-09 13:50:59,648 [621] INFO pulse.unloader:
Residual: 0.0002592876931300245
2024-03-09 13:50:59,648 [621] INFO pulse.unloader:
Iteration: 3
2024-03-09 13:50:59,823 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:59,824 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:59,868 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:59,869 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:59,911 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:59,912 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:50:59,951 [621] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.593 ml
2024-03-09 13:51:03,047 [621] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.593 ml
2024-03-09 13:51:03,220 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:51:03,222 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:51:03,265 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:51:03,266 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:51:03,309 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:51:03,310 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:51:03,349 [621] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.750 ml
2024-03-09 13:51:03,363 [621] INFO pulse.unloader:
Residual: 3.931304295917144e-05
2024-03-09 13:51:03,364 [621] INFO pulse.unloader: ########################################################################
Unloading suceeding
# Get the unloaded geometry
unloaded_geometry = unloader.unloaded_geometry
2024-03-09 13:51:03,548 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:51:03,549 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:51:03,592 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:51:03,593 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:51:03,636 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-03-09 13:51:03,637 [621] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
fig = plot(geometry.mesh, opacity=0.0, show=False)
fig.add_plot(plot(unloaded_geometry.mesh, color="red", show=False))
fig.show()